Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
18
ATAC-seq
6
MeRIP-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
pCHi-C
1
whole genome sequencing assay
Assay category
92
DNA binding
18
DNA accessibility
4
3D chromatin structure
DNA methylation
1
DNA sequencing
Target of assay
83
control
9
transcription factor
3
histone
3
histone modification
3
nucleotide modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
66
November, 2017
16
May, 2021
13
August, 2021
11
October, 2019
6
February, 2023
6
November, 2020
4
February, 2021
4
November, 2018
3
January, 2019
3
November, 2019
1
December, 2018
1
January, 2018
1
March, 2020
1
October, 2022
Available data
581
bam
521
bigWig
426
fastq
bed narrowPeak
355
bigBed narrowPeak
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
134
Homo sapiens
Biosample type
679
tissue
471
primary cell
136
cell line
131
in vitro differentiated cells
2
stem cell
Organ
77
liver
37
pancreas
29
epithelium
7
blood
7
bodily fluid
5
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
131
AMP
5
T1D
community
Genome assembly (visualization)
25
hg19
1
GRCh38
Lab
114
AMP-T2D consortium
11
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Audit category:
32
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
award.project!
community
files.file_type!
bed narrowPeak
tsv
BIOSAMPLE
ASSAY
136 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
pCHi-C
whole genome sequencing assay
cell line
HepG2
71
2
2
1
1
EndoC_BH1
2
17
6
1
3
2
2
1
Panc1
7
1
GM12878
6
1
HEK293T
2
+ See 7 more…
See all biosamples
Download