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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
5
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
95
DNA binding
DNA methylation
6
Transcription
1
DNA accessibility
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
668
February, 2021
406
November, 2017
363
August, 2017
314
August, 2021
306
October, 2019
296
May, 2020
243
May, 2021
168
July, 2018
120
May, 2019
102
February, 2023
80
April, 2019
79
December, 2017
77
July, 2019
76
October, 2018
73
September, 2018
72
November, 2018
65
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
111
fastq
110
bam
99
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
5
tsv
1
csv
Organism
102
Homo sapiens
Biosample type
83
cell line
18
tissue
1
primary cell
Organ
54
liver
33
blood
33
bodily fluid
13
spleen
1
pancreas
Project
102
AMP
Genome assembly (visualization)
89
GRCh38
88
hg19
Lab
102
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
102 results
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Clear Filters
ChIP-seq
total RNA-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
5
GM12878
33
tissue
spleen
13
liver
4
pancreas
1
primary cell
pancreatic cell
1
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