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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
664
February, 2021
406
November, 2017
396
August, 2017
319
August, 2021
296
May, 2020
245
October, 2019
186
June, 2019
168
July, 2018
162
May, 2021
113
May, 2019
106
February, 2023
94
December, 2017
81
November, 2018
80
April, 2019
77
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
57
March, 2020
49
April, 2018
42
May, 2022
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
77
bigWig
73
bam
65
tsv
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
77
Homo sapiens
Biosample type
55
tissue
22
primary cell
Organ
17
connective tissue
16
brain
15
heart
12
adipose tissue
9
blood vessel
9
vasculature
8
liver
8
musculature of body
7
epithelium
7
kidney
limb
4
pancreas
3
artery
1
pericardium
Project
77
AMP
Genome assembly (visualization)
76
hg19
71
GRCh38
Lab
77
AMP-T2D consortium
assay_slims!
DNA methylation
lab.title!
Kyle Gaulton, UCSD
organ_slims!
limb
BIOSAMPLE
ASSAY
77 results
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Clear Filters
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart left ventricle
2
2
right lobe of liver
2
2
+ See 17 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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