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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • 1271total RNA-seq
  • 389ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 26Hi-C
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
Assay category
  • 1765DNA binding
  • 1506Transcription
  • 608DNA accessibility
  • DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 339control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 670February, 2021
  • 406November, 2017
  • 396August, 2017
  • 314October, 2019
  • 296May, 2020
  • 245May, 2021
  • 218June, 2019
  • 168July, 2018
  • 151August, 2021
  • 120May, 2019
  • 103February, 2023
  • 94December, 2017
  • 81July, 2019
  • 81November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 61November, 2019
  • 57March, 2020
  • 49April, 2018
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 16November, 2020
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3188bam
  • 2936bigWig
  • 1647bed narrowPeak
  • 1486tsv
  • 1173fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 4044Homo sapiens
Biosample type
  • 2495tissue
  • 616cell line
  • 548primary cell
  • 387in vitro differentiated cells
  • 8stem cell
Organ
  • 753liver
  • 749pancreas
  • 672connective tissue
  • 485adipose tissue
  • 383heart
  • 362epithelium
  • 284brain
  • 233vasculature
  • 228blood vessel
  • 159kidney
  • 158bone element
  • 141artery
  • 121limb
  • 90musculature of body
  • 61blood
  • 61bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 23spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 4054AMP
Genome assembly (visualization)
  • 2979hg19
  • 2836GRCh38
  • 5hg18
Lab
  • 3854AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 340inconsistent ontology term
  • 28inconsistent control
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
assay_slims!
  • DNA methylation
BIOSAMPLE
ASSAY

4054 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
Hi-C
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
tissue
islet of Langerhans69284556141411
adipose tissue238231
liver1451672012111
bone element84
heart left ventricle353218311
cell line
HepG23605121
EndoC_BH11331191621
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte67571
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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