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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
68
ATAC-seq
57
ChIP-seq
7
snATAC-seq
6
single cell RNA-seq
4
MeRIP-seq
4
pCHi-C
3
Hi-C
1
DNase-seq
1
FAIRE-seq
Assay category
292
Transcription
77
DNA accessibility
57
DNA binding
3
3D chromatin structure
DNA methylation
Target of assay
51
histone
51
histone modification
37
narrow histone mark
15
control
broad histone mark
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
120
July, 2018
119
August, 2017
52
October, 2019
39
November, 2019
36
May, 2021
18
February, 2023
18
May, 2022
6
April, 2018
6
March, 2020
6
September, 2017
5
March, 2019
4
January, 2021
4
November, 2020
2
August, 2021
1
August, 2022
1
October, 2017
Available data
336
bam
290
bigWig
268
tsv
147
fastq
50
bed narrowPeak
15
bed bed3+
txt
5
tagAlign
4
bed broadPeak
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bedpe
Organism
437
Homo sapiens
Biosample type
437
tissue
Organ
388
pancreas
21
eye
4
gonad
4
ovary
1
brain
1
connective tissue
1
limb
1
lymph node
1
pituitary gland
1
skin of body
Project
411
AMP
26
T1D
Genome assembly (visualization)
333
hg19
308
GRCh38
Lab
385
AMP-T2D consortium
40
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
9
missing controlled_by
assay_slims!
DNA methylation
files.file_type!
txt
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
437 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
MeRIP-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
286
68
57
7
6
4
4
3
1
1
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