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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
170
ChIP-seq
22
ATAC-seq
3
DNase-seq
3
small RNA-seq
2
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
170
DNA binding
25
DNA accessibility
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
37
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
50
August, 2017
40
May, 2022
8
July, 2019
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
308
bam
283
bigWig
159
tsv
126
bed narrowPeak
89
fastq
74
tagAlign
58
bigBed narrowPeak
9
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
377
Homo sapiens
Biosample type
cell line
349
tissue
15
in vitro differentiated cells
13
primary cell
Organ
743
pancreas
662
connective tissue
483
adipose tissue
377
liver
341
epithelium
331
kidney
281
brain
281
heart
151
bone element
132
vasculature
127
blood vessel
121
limb
90
musculature of body
43
nerve
40
artery
29
embryo
29
eye
22
vein
20
lung
18
ureter
16
spleen
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
377
AMP
Genome assembly (visualization)
286
hg19
256
GRCh38
Lab
337
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_slims!
DNA methylation
biosample_type!
cell line
month_released!
February, 2023
November, 2018
BIOSAMPLE
ASSAY
377 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
141
20
1
1
1
1
right lobe of liver
3
10
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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