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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
175
total RNA-seq
22
ATAC-seq
6
DNase-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
178
DNA binding
28
DNA accessibility
DNA methylation
2
3D chromatin structure
Target of assay
89
histone modification
88
histone
55
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
50
August, 2017
40
May, 2022
11
October, 2019
8
July, 2019
7
November, 2018
5
December, 2019
4
August, 2021
4
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
160
tsv
133
bed narrowPeak
96
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
389
Homo sapiens
Biosample type
cell line
361
tissue
15
in vitro differentiated cells
13
primary cell
Organ
746
pancreas
663
connective tissue
484
adipose tissue
384
liver
341
epithelium
331
kidney
283
brain
281
heart
151
bone element
132
vasculature
127
blood vessel
121
limb
90
musculature of body
43
nerve
40
artery
29
embryo
29
eye
23
spleen
22
vein
20
lung
18
ureter
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
389
AMP
Genome assembly (visualization)
293
hg19
263
GRCh38
Lab
349
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_slims!
DNA methylation
biosample_type!
cell line
month_released!
February, 2023
BIOSAMPLE
ASSAY
389 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
145
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
2
islet of Langerhans
4
ovary
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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