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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
pCHi-C
1
small RNA-seq
Assay category
162
DNA accessibility
121
Transcription
27
DNA binding
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
81
June, 2019
47
September, 2023
14
May, 2023
13
April, 2019
12
October, 2019
8
February, 2021
7
July, 2019
3
December, 2019
3
May, 2019
1
March, 2020
Available data
160
bed narrowPeak
114
bam
104
bigWig
91
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
19
tsv
5
csv
1
hic
Organism
317
Homo sapiens
Biosample type
289
tissue
28
primary cell
cell line
Organ
733
pancreas
633
connective tissue
465
adipose tissue
354
epithelium
351
liver
316
kidney
260
heart
214
brain
159
bone element
122
vasculature
117
blood vessel
87
limb
70
musculature of body
61
artery
60
eye
27
nerve
25
embryo
20
lung
19
spleen
18
ureter
16
skeleton
13
vein
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
270
AMP
47
KPMP
Genome assembly (visualization)
178
GRCh38
98
hg19
Lab
142
Katalin Susztak, Upenn
128
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
7
inconsistent ontology term
assay_slims!
DNA methylation
biosample_type!
cell line
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
317 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
pCHi-C
small RNA-seq
tissue
kidney
13
75
64
49
17
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 11 more…
primary cell
epithelial cell of proximal tubule
1
1
7
kidney epithelial cell
1
1
3
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
glomerular endothelial cell
1
1
+ See 3 more…
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