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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
DNase-seq
28
ChIP-seq
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
182
DNA accessibility
28
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
14
histone
14
histone modification
11
transcription factor
7
broad histone mark
7
narrow histone mark
3
control
2
RNA binding protein
Date released
167
June, 2019
23
August, 2017
8
October, 2019
6
November, 2018
3
December, 2017
3
July, 2019
2
May, 2021
2
September, 2017
1
February, 2021
1
May, 2022
1
November, 2020
Available data
2400
bam
2268
bigWig
1289
tsv
1240
bed narrowPeak
749
fastq
663
bigBed narrowPeak
272
tagAlign
240
bed broadPeak
217
bed bed3+
203
bigBed broadPeak
158
txt
112
zippedFastqFolder
64
xls
17
hic
14
bedpe bed3+
7
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
217
Homo sapiens
Biosample type
181
tissue
31
primary cell
in vitro differentiated cells
3
stem cell
2
cell line
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
21
epithelium
ureter
14
connective tissue
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
2
nerve
2
vein
1
spleen
Project
217
AMP
Genome assembly (visualization)
210
GRCh38
194
hg19
Lab
215
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
biosample_type!
in vitro differentiated cells
organ_slims!
liver
ureter
BIOSAMPLE
ASSAY
217 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 37 more…
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 16 more…
stem cell
hESC
3
cell line
Panc1
1
1
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