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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
Assay category
94
DNA binding
Target of assay
716
histone modification
715
histone
453
transcription factor
360
narrow histone mark
355
broad histone mark
94
RNA binding protein
88
recombinant protein
33
chromatin remodeller
21
control
5
other context
5
other post-translational modification
Date released
33
November, 2017
21
November, 2018
11
October, 2018
6
January, 2019
5
May, 2024
4
August, 2017
4
May, 2019
3
April, 2019
2
December, 2017
2
December, 2018
2
June, 2019
1
August, 2021
Available data
94
bigWig
93
bed narrowPeak
91
bam
86
bigBed narrowPeak
81
fastq
7
bed broadPeak
7
bigBed broadPeak
2
bed bed3+
1
tar
Organism
94
Homo sapiens
Biosample type
62
cell line
27
tissue
5
primary cell
in vitro differentiated cells
Organ
54
liver
11
heart
10
blood
10
bodily fluid
9
pancreas
6
connective tissue
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
2
kidney
1
artery
1
eye
Project
94
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
88
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_slims!
DNA methylation
biosample_type!
in vitro differentiated cells
organ_slims!
epithelium
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
cell line
HepG2
52
GM12878
10
tissue
body of pancreas
5
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
+ See 8 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
cardiac fibroblast
1
cardiac muscle cell
1
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