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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ATAC-seq
Assay category
11
DNA accessibility
Date released
10
February, 2023
1
February, 2021
Available data
2740
bam
2454
bigWig
1362
bed narrowPeak
1320
tsv
933
bigBed narrowPeak
909
fastq
298
tagAlign
271
bed broadPeak
236
bigBed broadPeak
234
bed bed3+
95
txt
17
bedpe bed3+
14
hic
11
bed bed3
6
csv
4
bed bedgraph
3
tar
2
ibed
1
hdf5
1
tagAlign bed3+
Organism
11
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
1
cell line
primary cell
Organ
5
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
11
AMP
Genome assembly (visualization)
11
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
0
Xin Sun, UCSD
Audit category:
1
inconsistent replicate
assay_slims!
DNA methylation
biosample_type!
primary cell
BIOSAMPLE
ASSAY
11 results
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ATAC-seq
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
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