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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
627
ChIP-seq
243
total RNA-seq
68
ATAC-seq
9
DNase-seq
7
single cell RNA-seq
5
pCHi-C
4
Hi-C
3
small RNA-seq
2
STARR-seq
1
whole genome sequencing assay
Assay category
627
DNA binding
253
Transcription
77
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
345
transcription factor
154
histone modification
153
histone
125
control
82
recombinant protein
77
broad histone mark
76
narrow histone mark
61
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
69
February, 2021
63
December, 2017
52
November, 2018
50
August, 2017
50
May, 2019
40
May, 2022
37
August, 2021
35
February, 2023
32
October, 2019
12
July, 2019
7
March, 2020
5
January, 2019
4
February, 2020
3
June, 2019
1
December, 2018
Available data
819
bam
735
bigWig
547
bed narrowPeak
462
fastq
418
bigBed narrowPeak
236
tsv
88
tagAlign
66
bed broadPeak
66
bigBed broadPeak
12
bed bed3+
3
bedpe bed3+
3
hic
3
tar
1
bed bed3
1
csv
1
vcf
Organism
969
Homo sapiens
Biosample type
488
tissue
466
cell line
primary cell
15
in vitro differentiated cells
Organ
771
liver
639
connective tissue
594
pancreas
483
adipose tissue
371
heart
317
kidney
264
brain
197
blood vessel
197
vasculature
158
bone element
139
artery
121
limb
118
epithelium
77
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
969
AMP
Genome assembly (visualization)
745
hg19
687
GRCh38
Lab
898
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
biosample_type!
primary cell
BIOSAMPLE
ASSAY
969 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
Hi-C
small RNA-seq
STARR-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
1
1
1
1
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
2
1
+ See 4 more…
cell line
HepG2
378
14
1
2
2
2
1
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
hepatocyte
15
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