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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
548
ChIP-seq
184
total RNA-seq
22
ATAC-seq
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
548
DNA binding
188
Transcription
26
DNA accessibility
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
107
control
100
histone modification
99
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
41
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
52
November, 2018
50
August, 2017
40
May, 2022
31
August, 2021
7
July, 2019
6
October, 2019
5
January, 2019
3
February, 2021
3
March, 2020
1
December, 2018
1
February, 2020
Available data
668
bam
610
bigWig
462
fastq
435
bed narrowPeak
356
bigBed narrowPeak
169
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
7
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
vcf
Organism
771
Homo sapiens
Biosample type
400
cell line
356
tissue
15
in vitro differentiated cells
primary cell
Organ
771
liver
639
connective tissue
594
pancreas
483
adipose tissue
371
heart
317
kidney
264
brain
197
blood vessel
197
vasculature
158
bone element
139
artery
121
limb
118
epithelium
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
771
AMP
Genome assembly (visualization)
611
hg19
519
GRCh38
Lab
700
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
biosample_type!
primary cell
organ_slims!
mammary gland
musculature of body
BIOSAMPLE
ASSAY
771 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
2
2
2
1
tissue
liver
145
167
20
2
1
1
1
1
right lobe of liver
10
3
1
2
2
in vitro differentiated cells
hepatocyte
15
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