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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
41
single cell RNA-seq
16
total RNA-seq
9
DNase-seq
3
ATAC-seq
1
FAIRE-seq
Assay category
70
DNA binding
57
Transcription
13
DNA accessibility
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
91
December, 2017
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2023
1
August, 2022
Available data
122
fastq
80
bam
76
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
19
zippedFastqFolder
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
140
Homo sapiens
Biosample type
60
cell line
60
primary cell
20
tissue
Organ
52
liver
22
pancreas
19
epithelium
15
blood
15
bodily fluid
7
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
81
AMP
59
HPAP
Genome assembly (visualization)
75
GRCh38
71
hg19
Lab
81
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_slims!
DNA methylation
biosample_type!
stem cell
month_released!
July, 2019
BIOSAMPLE
ASSAY
140 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
45
GM12878
15
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
pancreatic cell
1
tissue
spleen
6
1
liver
4
2
body of pancreas
2
brain
2
omental fat pad
1
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