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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
9
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
52
DNA binding
9
Transcription
2
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
47
control
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
17
August, 2021
2
February, 2021
1
December, 2018
1
May, 2020
1
November, 2018
Available data
346
fastq
345
bam
bigWig
288
bed narrowPeak
273
bigBed narrowPeak
54
bed broadPeak
54
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
69
Homo sapiens
Biosample type
91
tissue
69
cell line
2
primary cell
1
in vitro differentiated cells
Organ
69
liver
36
pancreas
29
epithelium
10
artery
10
blood vessel
10
heart
10
vasculature
7
kidney
6
blood
6
bodily fluid
1
mammary gland
Project
69
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
52
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
1
missing controlled_by
assay_slims!
DNA methylation
files.file_type!
bigWig
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
69 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
52
9
2
2
2
1
1
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