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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
246
total RNA-seq
200
ATAC-seq
139
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
10
Hi-C
3
DNase-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
386
Transcription
260
DNA accessibility
248
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
213
histone
213
histone modification
110
broad histone mark
103
narrow histone mark
33
control
5
RNA binding protein
5
transcription factor
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
July, 2018
44
August, 2017
43
April, 2018
42
February, 2021
30
October, 2019
21
June, 2019
20
July, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
554
bigWig
548
bam
354
fastq
286
bed narrowPeak
214
tsv
112
zippedFastqFolder
100
bigBed narrowPeak
100
tagAlign
bed broadPeak
48
bigBed broadPeak
36
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
921
Homo sapiens
Biosample type
2374
tissue
921
primary cell
602
cell line
393
in vitro differentiated cells
10
stem cell
Organ
298
epithelium
262
pancreas
30
connective tissue
24
vasculature
23
blood vessel
23
kidney
18
vein
musculature of body
11
liver
9
brain
9
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
439
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
518
hg19
433
GRCh38
Lab
404
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
bed broadPeak
month_released!
July, 2018
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
921 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
DNase-seq
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
5
1
pancreatic beta cell
13
21
23
3
1
CD8-positive, alpha-beta T cell
33
4
2
1
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