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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
10
Hi-C
3
DNase-seq
2
small RNA-seq
1
FAIRE-seq
Assay category
433
Transcription
260
DNA accessibility
258
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
44
August, 2017
43
April, 2018
42
February, 2021
31
June, 2019
30
October, 2019
22
July, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
610
bigWig
606
bam
399
fastq
295
bed narrowPeak
261
tsv
112
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
978
Homo sapiens
Biosample type
2526
tissue
978
primary cell
602
cell line
393
in vitro differentiated cells
10
stem cell
Organ
330
epithelium
298
pancreas
32
connective tissue
24
vasculature
23
blood vessel
23
kidney
18
vein
12
musculature of body
11
liver
9
brain
9
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
496
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
573
hg19
488
GRCh38
Lab
461
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
48
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
bed broadPeak
month_released!
June, 2018
BIOSAMPLE
ASSAY
978 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
DNase-seq
small RNA-seq
FAIRE-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
12
1
pancreatic beta cell
13
21
23
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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