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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
215
ChIP-seq
187
single cell RNA-seq
178
ATAC-seq
56
snATAC-seq
17
pCHi-C
8
Hi-C
2
DNase-seq
2
small RNA-seq
Assay category
431
Transcription
236
DNA accessibility
215
DNA binding
DNA methylation
8
3D chromatin structure
Target of assay
185
histone
185
histone modification
97
broad histone mark
88
narrow histone mark
33
control
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
59
September, 2018
59
September, 2020
48
July, 2018
43
April, 2018
42
February, 2021
39
August, 2017
22
July, 2019
13
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
May, 2019
1
November, 2018
Available data
593
bigWig
584
bam
402
fastq
282
bed narrowPeak
259
tsv
112
zippedFastqFolder
100
tagAlign
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
907
Homo sapiens
Biosample type
2175
tissue
907
primary cell
375
in vitro differentiated cells
306
cell line
10
stem cell
Organ
287
epithelium
277
pancreas
23
connective tissue
17
kidney
15
vasculature
14
blood vessel
9
brain
vein
8
blood
8
bodily fluid
6
heart
6
liver
4
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
425
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
507
hg19
426
GRCh38
Lab
390
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
DNA methylation
files.file_type!
bigBed narrowPeak
month_released!
December, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
907 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
Hi-C
DNase-seq
small RNA-seq
primary cell
monocyte
54
85
15
1
Langerhans cell
85
48
pancreatic alpha cell
52
13
12
29
1
pancreatic beta cell
21
13
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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