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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
27
ChIP-seq
17
pCHi-C
4
Hi-C
2
DNase-seq
Assay category
182
Transcription
180
DNA accessibility
DNA methylation
27
DNA binding
4
3D chromatin structure
Target of assay
23
control
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
93
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
40
February, 2021
34
May, 2021
12
August, 2017
8
January, 2021
8
June, 2019
5
October, 2019
3
October, 2022
1
August, 2021
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
bigWig
582
bam
399
fastq
278
bed narrowPeak
262
tsv
112
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
410
Homo sapiens
Biosample type
919
tissue
410
primary cell
135
in vitro differentiated cells
130
cell line
7
stem cell
Organ
122
epithelium
107
pancreas
8
blood
8
bodily fluid
blood vessel
7
vasculature
7
vein
6
connective tissue
5
kidney
2
heart
2
liver
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
267
HPAP
118
AMP
24
T1D
1
ITG
Genome assembly (visualization)
20
hg19
17
GRCh38
Lab
267
Klaus Kaestner, Upenn
118
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
14
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bigWig
lab.title!
Mark McCarthy, Oxford
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
410 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
Hi-C
DNase-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
1
exocrine cell
39
pancreatic beta cell
13
11
6
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
2
1
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