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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
245
total RNA-seq
198
ATAC-seq
185
single cell RNA-seq
56
snATAC-seq
27
DNase-seq
17
pCHi-C
9
Hi-C
2
small RNA-seq
Assay category
432
Transcription
281
DNA accessibility
255
DNA binding
DNA methylation
9
3D chromatin structure
Target of assay
216
histone
216
histone modification
110
broad histone mark
106
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
72
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
42
February, 2021
October, 2019
22
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
Available data
590
bigWig
578
bam
402
fastq
274
bed narrowPeak
262
tsv
112
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
5
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
Organism
994
Homo sapiens
Biosample type
2491
tissue
994
primary cell
631
cell line
386
in vitro differentiated cells
10
stem cell
Organ
320
epithelium
299
pancreas
38
connective tissue
22
kidney
20
brain
15
vasculature
13
musculature of body
12
heart
12
liver
10
blood vessel
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
512
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
592
hg19
514
GRCh38
Lab
477
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
csv
month_released!
October, 2019
BIOSAMPLE
ASSAY
994 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
12
1
pancreatic beta cell
13
21
23
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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