Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
187
ATAC-seq
187
single cell RNA-seq
142
ChIP-seq
56
snATAC-seq
31
DNase-seq
10
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
381
Transcription
275
DNA accessibility
142
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
105
histone
105
histone modification
56
narrow histone mark
49
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
May, 2021
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
August, 2017
43
April, 2018
42
February, 2021
34
October, 2019
22
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
460
bam
442
bigWig
402
fastq
212
tsv
168
bed narrowPeak
112
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
809
Homo sapiens
Biosample type
2460
tissue
809
primary cell
620
cell line
228
in vitro differentiated cells
10
stem cell
Organ
349
epithelium
299
pancreas
37
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
musculature of body
12
heart
9
liver
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
478
AMP
277
HPAP
53
T1D
1
ITG
Genome assembly (visualization)
419
hg19
373
GRCh38
Lab
478
AMP-T2D consortium
277
Klaus Kaestner, Upenn
53
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
tagAlign
month_released!
May, 2021
organ_slims!
lymph node
BIOSAMPLE
ASSAY
809 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
13
1
pancreatic beta cell
21
23
12
13
1
exocrine cell
39
pancreatic acinar cell
4
9
12
8
1
+ See 86 more…
See all biosamples
Download