Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
29
DNase-seq
26
ATAC-seq
1
FAIRE-seq
Assay category
64
DNA binding
56
DNA accessibility
Target of assay
102
histone
102
histone modification
54
narrow histone mark
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
39
June, 2019
29
September, 2018
21
August, 2017
13
October, 2019
6
November, 2017
5
September, 2017
2
August, 2021
2
May, 2019
2
November, 2020
1
February, 2021
Available data
404
bam
388
bigWig
369
fastq
212
tsv
120
bed narrowPeak
112
zippedFastqFolder
88
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
34
bed bed3+
9
tagAlign
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
120
Homo sapiens
Biosample type
731
tissue
386
cell line
120
primary cell
90
in vitro differentiated cells
1
stem cell
Organ
79
epithelium
45
pancreas
17
kidney
16
vasculature
13
connective tissue
12
blood vessel
11
brain
8
vein
6
heart
5
liver
5
musculature of body
3
eye
Project
120
AMP
Genome assembly (visualization)
116
GRCh38
113
hg19
Lab
120
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
May, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
120 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
pancreatic beta cell
4
7
pancreatic ductal cell
7
4
pancreatic alpha cell
4
6
skeletal muscle myoblast
8
2
pancreatic acinar cell
4
5
+ See 27 more…
See all biosamples
Download