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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
262
ChIP-seq
247
total RNA-seq
200
ATAC-seq
144
single cell RNA-seq
56
snATAC-seq
29
DNase-seq
17
pCHi-C
8
Hi-C
2
small RNA-seq
Assay category
393
Transcription
285
DNA accessibility
262
DNA binding
DNA methylation
8
3D chromatin structure
Target of assay
222
histone
222
histone modification
113
broad histone mark
109
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
July, 2018
April, 2018
42
February, 2021
22
July, 2019
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
555
bigWig
546
bam
364
fastq
282
bed narrowPeak
221
tsv
112
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
965
Homo sapiens
Biosample type
2733
tissue
965
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
320
epithelium
266
pancreas
36
connective tissue
36
vasculature
33
kidney
31
blood vessel
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
483
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
558
hg19
481
GRCh38
Lab
448
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
April, 2018
organ_slims!
vein
BIOSAMPLE
ASSAY
965 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
primary cell
monocyte
85
54
15
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
9
1
pancreatic beta cell
13
21
23
9
1
CD8-positive, alpha-beta T cell
33
4
2
1
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