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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
Assay category
104
DNA binding
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
22
August, 2017
15
September, 2018
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
1
May, 2019
Available data
101
bigWig
93
bed narrowPeak
92
bam
47
tagAlign
40
fastq
15
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
104
Homo sapiens
Biosample type
324
tissue
104
primary cell
55
in vitro differentiated cells
19
cell line
1
stem cell
Organ
33
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
4
kidney
3
brain
2
liver
Project
64
AMP
40
T1D
Genome assembly (visualization)
101
hg19
91
GRCh38
Lab
54
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
month_released!
June, 2019
organ_slims!
ureter
BIOSAMPLE
ASSAY
104 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
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