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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
907
ChIP-seq
196
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
907
DNA binding
406
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
270
August, 2017
242
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1890
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
364
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2666
Homo sapiens
Biosample type
2675
tissue
1030
primary cell
661
cell line
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
499
pancreas
482
adipose tissue
356
liver
304
heart
264
brain
234
kidney
158
bone element
131
blood vessel
131
vasculature
121
limb
77
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2578
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1779
GRCh38
1746
hg19
Lab
2387
AMP-T2D consortium
78
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
biosample_type!
in vitro differentiated cells
files.file_type!
xls
BIOSAMPLE
ASSAY
2675 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
4
adipose tissue
382
2
3
1
liver
167
145
20
1
2
1
1
1
kidney
49
27
11
64
13
6
1
1
bone element
84
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