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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1022
total RNA-seq
877
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
27
snATAC-seq
16
small RNA-seq
9
Hi-C
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1218
Transcription
877
DNA binding
290
DNA accessibility
DNA methylation
9
3D chromatin structure
Target of assay
614
histone modification
613
histone
316
narrow histone mark
297
broad histone mark
184
control
81
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
244
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
11
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
4
March, 2019
4
November, 2020
4
September, 2017
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1881
bam
1745
bigWig
1048
tsv
982
bed narrowPeak
561
bigBed narrowPeak
364
fastq
238
tagAlign
213
bed broadPeak
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2484
Homo sapiens
Biosample type
2493
tissue
992
primary cell
647
cell line
361
in vitro differentiated cells
3
stem cell
Organ
534
connective tissue
475
adipose tissue
462
pancreas
347
liver
270
heart
235
brain
230
kidney
158
bone element
123
blood vessel
123
vasculature
85
limb
69
artery
53
eye
41
nerve
39
musculature of body
21
spleen
19
lung
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
2400
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1630
GRCh38
1539
hg19
Lab
2142
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
12
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
files.file_type!
bed bed3+
lab.title!
Maike Sander, UCSD
month_released!
March, 2020
BIOSAMPLE
ASSAY
2493 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
290
48
65
6
7
3
4
1
4
1
adipose tissue
382
2
3
liver
166
142
20
1
1
kidney
49
27
75
64
6
1
1
bone element
84
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