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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
829
total RNA-seq
255
ATAC-seq
178
DNase-seq
167
single cell RNA-seq
27
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1012
Transcription
857
DNA binding
464
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
601
histone modification
600
histone
303
broad histone mark
297
narrow histone mark
164
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
270
August, 2017
242
October, 2019
May, 2020
172
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
86
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
59
July, 2019
59
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1697
bam
1586
bigWig
957
bed narrowPeak
933
tsv
561
bigBed narrowPeak
364
fastq
213
bed broadPeak
205
bed bed3+
188
tagAlign
176
bigBed broadPeak
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2375
Homo sapiens
Biosample type
2384
tissue
882
primary cell
658
cell line
386
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
493
pancreas
482
adipose tissue
304
heart
263
brain
236
kidney
163
liver
131
blood vessel
131
vasculature
121
limb
76
musculature of body
73
artery
66
bone element
56
eye
43
nerve
23
spleen
20
lung
18
ureter
15
epithelium
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2287
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1681
GRCh38
1570
hg19
Lab
2095
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
files.file_type!
bed bed3
txt
month_released!
May, 2020
BIOSAMPLE
ASSAY
2384 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
71
286
68
1
6
7
4
3
1
4
adipose tissue
2
382
3
1
kidney
27
75
13
51
6
1
1
liver
95
24
20
2
1
1
1
1
heart left ventricle
35
3
2
3
18
1
1
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