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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
999
total RNA-seq
530
ChIP-seq
251
ATAC-seq
180
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
12
Hi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1179
Transcription
530
DNA binding
280
DNA accessibility
DNA methylation
12
3D chromatin structure
Target of assay
316
histone modification
315
histone
216
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
248
August, 2017
229
August, 2021
195
October, 2019
193
May, 2020
120
July, 2018
95
February, 2023
66
May, 2022
July, 2019
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
29
October, 2018
25
November, 2017
24
February, 2020
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
3
November, 2018
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1835
bam
1701
bigWig
1028
tsv
977
bed narrowPeak
bigBed narrowPeak
364
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2117
Homo sapiens
Biosample type
2120
tissue
899
primary cell
377
in vitro differentiated cells
306
cell line
10
stem cell
Organ
521
connective tissue
462
adipose tissue
433
pancreas
300
liver
209
kidney
205
heart
158
bone element
139
brain
64
blood vessel
64
vasculature
53
eye
47
artery
33
limb
33
musculature of body
20
lung
17
nerve
16
skeleton
15
epithelium
10
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
2023
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1235
GRCh38
1201
hg19
Lab
1768
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
23
missing controlled_by
assay_slims!
DNA methylation
files.file_type!
bigBed narrowPeak
month_released!
July, 2019
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
2120 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
6
7
4
3
4
adipose tissue
382
1
2
1
liver
165
107
20
1
1
1
kidney
49
9
75
64
6
1
bone element
84
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