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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
887
ChIP-seq
259
ATAC-seq
177
DNase-seq
171
single cell RNA-seq
87
RNA microarray
23
pCHi-C
17
snATAC-seq
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
887
DNA binding
457
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
179
control
88
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
270
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
38
March, 2020
25
February, 2020
22
October, 2017
15
May, 2023
13
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
August, 2022
Available data
1868
bam
1742
bigWig
1074
tsv
970
bed narrowPeak
548
bigBed narrowPeak
342
fastq
238
tagAlign
212
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2687
Homo sapiens
Biosample type
2695
tissue
1030
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
541
connective tissue
498
pancreas
482
adipose tissue
356
liver
304
heart
298
kidney
264
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
77
musculature of body
73
artery
56
eye
43
nerve
spleen
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2617
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
1829
GRCh38
1732
hg19
Lab
2362
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
month_released!
August, 2022
organ_slims!
lung
spleen
BIOSAMPLE
ASSAY
2695 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
6
4
6
3
1
4
adipose tissue
382
2
3
1
liver
167
145
20
2
1
1
1
1
kidney
49
27
75
13
64
6
1
1
bone element
84
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