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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
total RNA-seq
155
ChIP-seq
21
ATAC-seq
4
DNase-seq
3
small RNA-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
174
Transcription
155
DNA binding
25
DNA accessibility
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
50
August, 2017
48
December, 2017
40
May, 2022
7
July, 2019
7
November, 2018
6
October, 2019
3
March, 2020
1
February, 2020
1
February, 2021
Available data
288
bam
265
bigWig
154
tsv
113
bed narrowPeak
81
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bedpe bed3+
1
csv
1
hic
Organism
356
Homo sapiens
Biosample type
400
cell line
356
tissue
15
in vitro differentiated cells
13
primary cell
Organ
540
connective tissue
481
adipose tissue
481
pancreas
356
liver
298
kidney
268
heart
263
brain
150
bone element
121
limb
96
blood vessel
96
vasculature
77
musculature of body
43
nerve
38
artery
25
eye
23
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
356
AMP
Genome assembly (visualization)
267
hg19
238
GRCh38
Lab
316
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_slims!
DNA methylation
month_released!
February, 2023
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
356 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
1
1
1
1
right lobe of liver
3
10
1
2
2
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