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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
861
total RNA-seq
752
ChIP-seq
239
ATAC-seq
179
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
15
Hi-C
13
small RNA-seq
4
FAIRE-seq
3
snDrop-seq
Assay category
1053
Transcription
752
DNA binding
445
DNA accessibility
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
139
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
Date released
544
February, 2021
236
October, 2019
229
August, 2021
220
August, 2017
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
52
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
13
November, 2018
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1602
bam
1491
bigWig
922
tsv
871
bed narrowPeak
512
bigBed narrowPeak
283
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
157
txt
64
xls
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2370
Homo sapiens
Biosample type
2379
tissue
1011
primary cell
379
in vitro differentiated cells
255
cell line
10
stem cell
Organ
541
connective tissue
495
pancreas
482
adipose tissue
liver
304
heart
298
kidney
264
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
77
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2282
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1605
GRCh38
1479
hg19
Lab
2071
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
month_released!
November, 2020
organ_slims!
liver
BIOSAMPLE
ASSAY
2379 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
adipose tissue
382
2
3
1
kidney
49
27
75
64
13
6
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
1
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