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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
859
ChIP-seq
259
ATAC-seq
180
single cell RNA-seq
177
DNase-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
859
DNA binding
468
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
622
histone modification
621
histone
322
narrow histone mark
299
broad histone mark
179
control
88
transcription factor
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
268
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
76
April, 2019
66
May, 2022
63
October, 2018
59
July, 2019
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
35
May, 2024
25
February, 2020
22
October, 2017
19
April, 2020
15
May, 2023
13
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1845
bam
1715
bigWig
1074
tsv
944
bed narrowPeak
528
bigBed narrowPeak
327
fastq
238
tagAlign
212
bed broadPeak
202
bed bed3+
175
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2678
Homo sapiens
Biosample type
2687
tissue
1020
primary cell
596
cell line
383
in vitro differentiated cells
10
stem cell
Organ
536
connective tissue
491
pancreas
477
adipose tissue
354
liver
297
kidney
294
heart
264
brain
158
bone element
128
blood vessel
128
vasculature
121
limb
77
musculature of body
72
artery
56
eye
43
nerve
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
2590
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1802
GRCh38
1710
hg19
Lab
2340
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
DNA methylation
organ_slims!
spleen
stomach
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
2687 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
69
68
6
1
7
4
3
1
4
adipose tissue
382
2
3
1
liver
167
144
20
1
2
1
1
1
kidney
49
26
75
64
13
6
1
1
bone element
84
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