Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
42
ATAC-seq
32
DNase-seq
24
total RNA-seq
6
single cell RNA-seq
4
small RNA-seq
3
pCHi-C
1
FAIRE-seq
1
Hi-C
Assay category
282
DNA binding
75
DNA accessibility
34
Transcription
DNA methylation
1
3D chromatin structure
Target of assay
238
histone
238
histone modification
132
narrow histone mark
106
broad histone mark
41
control
3
RNA binding protein
3
transcription factor
Date released
112
October, 2019
82
November, 2017
78
May, 2019
36
February, 2023
28
June, 2019
16
October, 2017
15
February, 2020
15
July, 2019
6
August, 2021
5
March, 2020
2
November, 2018
Available data
311
bam
292
bed narrowPeak
271
bigWig
178
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
37
tsv
32
bed bed3+
32
bigBed broadPeak
12
fastq
1
bed bed3
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
395
Homo sapiens
Biosample type
395
tissue
66
cell line
46
primary cell
Organ
541
connective tissue
499
pancreas
482
adipose tissue
356
liver
304
heart
298
kidney
264
brain
158
bone element
131
blood vessel
131
vasculature
121
limb
77
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
395
AMP
Genome assembly (visualization)
307
GRCh38
212
hg19
Lab
395
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_slims!
DNA methylation
organ_slims!
blood
BIOSAMPLE
ASSAY
395 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
pCHi-C
FAIRE-seq
Hi-C
tissue
coronary artery
5
36
2
1
brain
20
1
14
1
tibial artery
23
1
2
1
layer of hippocampus
23
aorta
13
1
4
1
1
+ See 83 more…
See all biosamples
Download