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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
94
ChIP-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
470
DNA accessibility
94
DNA binding
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
117
August, 2017
95
February, 2023
66
May, 2022
59
July, 2019
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
31
December, 2017
25
February, 2020
19
April, 2020
17
November, 2018
15
May, 2023
15
October, 2018
8
January, 2021
8
October, 2017
6
April, 2018
6
April, 2019
5
March, 2019
5
May, 2024
4
May, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1257
bam
1234
bigWig
1076
tsv
464
bed narrowPeak
249
bigBed narrowPeak
223
fastq
190
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1922
Homo sapiens
Biosample type
1924
tissue
758
primary cell
540
cell line
245
in vitro differentiated cells
7
stem cell
Organ
484
connective tissue
426
adipose tissue
397
pancreas
272
kidney
240
liver
193
heart
158
bone element
61
blood vessel
61
vasculature
55
brain
55
limb
54
eye
48
musculature of body
46
artery
20
lung
18
ureter
16
skeleton
15
epithelium
9
spleen
8
nerve
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1829
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1346
GRCh38
1305
hg19
Lab
1609
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
assay_slims!
DNA methylation
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
1924 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
ChIP-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
292
68
6
1
7
7
4
3
1
2
adipose tissue
382
3
1
liver
167
20
1
2
37
1
1
1
kidney
49
75
64
13
1
6
1
1
bone element
84
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