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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
25
total RNA-seq
20
ChIP-seq
10
MeRIP-seq
9
snATAC-seq
2
Capture-C
2
Hi-C
1
pCHi-C
Assay category
85
DNA accessibility
DNA methylation
25
Transcription
20
DNA binding
2
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
February, 2023
39
May, 2022
20
August, 2017
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
7
August, 2020
7
March, 2020
4
August, 2021
4
July, 2018
4
October, 2019
3
March, 2019
1
August, 2022
1
February, 2020
1
October, 2017
Available data
bam
619
bigWig
424
fastq
411
tsv
214
bed narrowPeak
91
bigBed narrowPeak
39
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
145
Homo sapiens
Biosample type
65
primary cell
53
tissue
27
cell line
Organ
205
kidney
145
pancreas
139
heart
102
liver
96
epithelium
85
bone element
72
connective tissue
44
adipose tissue
40
brain
32
musculature of body
22
eye
20
lung
12
blood vessel
12
vasculature
9
blood
9
bodily fluid
8
limb
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
70
AMP
65
HPAP
10
T1D
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
65
Klaus Kaestner, Upenn
55
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
26
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA methylation
files.file_type!
bam
hic
month_released!
February, 2023
BIOSAMPLE
ASSAY
145 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
MeRIP-seq
snATAC-seq
Capture-C
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
15
pancreatic beta cell
16
1
pancreatic acinar cell
4
tissue
islet of Langerhans
9
7
20
4
5
1
pancreas
1
4
1
body of pancreas
1
cell line
EndoC_BH1
18
6
2
Panc1
1
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