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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
single cell RNA-seq
Assay category
39
DNA binding
7
Transcription
DNA methylation
4
3D chromatin structure
1
DNA accessibility
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
22
August, 2017
10
June, 2019
8
July, 2019
7
May, 2019
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
65
bigWig
60
bed narrowPeak
54
bam
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
1
txt
Organism
51
Homo sapiens
Biosample type
39
tissue
12
primary cell
Organ
850
pancreas
763
liver
648
connective tissue
478
adipose tissue
438
epithelium
346
heart
267
kidney
247
brain
216
vasculature
213
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
56
eye
51
musculature of body
41
nerve
34
embryo
21
spleen
19
lung
19
vein
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
51
AMP
Genome assembly (visualization)
32
hg19
17
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bed bed3+
month_released!
December, 2019
March, 2020
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
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