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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
34
single cell RNA-seq
31
total RNA-seq
25
ChIP-seq
21
snATAC-seq
Assay category
98
DNA accessibility
65
Transcription
DNA methylation
25
DNA binding
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
707
February, 2021
406
November, 2017
396
May, 2021
363
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
168
July, 2018
158
May, 2022
120
May, 2019
80
April, 2019
79
December, 2017
77
July, 2019
76
October, 2018
73
September, 2018
72
November, 2018
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
zippedFastqFolder
59
bed narrowPeak
54
bam
54
fastq
46
bigWig
21
bigBed narrowPeak
7
txt
5
tsv
bed bed3+
Organism
188
Homo sapiens
Biosample type
93
primary cell
72
tissue
23
cell line
Organ
63
pancreas
45
liver
39
epithelium
18
blood
18
bodily fluid
7
spleen
1
musculature of body
Project
95
AMP
93
HPAP
Genome assembly (visualization)
64
hg19
26
GRCh38
Lab
93
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
31
AMP-T2D consortium
24
Kyle Gaulton, UCSD
assay_slims!
DNA methylation
files.file_type!
bed bed3+
month_released!
March, 2020
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
spleen
7
skeletal muscle tissue
1
cell line
GM12878
18
HepG2
5
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