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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
11
total RNA-seq
6
Hi-C
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
61
DNA binding
14
Transcription
6
3D chromatin structure
DNA methylation
3
DNA accessibility
Target of assay
44
histone
44
histone modification
28
broad histone mark
17
control
16
narrow histone mark
Date released
40
October, 2019
10
June, 2019
9
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
98
bam
98
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
14
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
85
Homo sapiens
Biosample type
73
tissue
12
primary cell
Organ
700
pancreas
662
connective tissue
650
liver
482
adipose tissue
338
epithelium
313
heart
237
brain
216
vasculature
215
blood vessel
158
bone element
137
artery
85
limb
81
kidney
61
blood
61
bodily fluid
56
eye
44
musculature of body
41
nerve
37
embryo
22
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
53
hg19
48
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
5
1
skeletal muscle tissue
9
1
1
1
1
1
muscle of leg
7
gastrocnemius medialis
1
4
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
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