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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
99
ChIP-seq
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
191
Transcription
101
DNA accessibility
99
DNA binding
DNA methylation
Target of assay
64
transcription factor
29
control
27
histone
27
histone modification
27
narrow histone mark
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
709
February, 2021
393
May, 2021
349
August, 2017
341
May, 2020
318
August, 2021
306
November, 2017
305
October, 2019
205
February, 2023
168
July, 2018
159
May, 2022
115
May, 2019
90
December, 2017
81
July, 2019
76
April, 2019
73
September, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
51
November, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
27
June, 2019
25
February, 2020
24
January, 2019
19
April, 2020
19
October, 2017
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
342
bam
312
bigWig
189
tsv
79
bed narrowPeak
60
fastq
52
bigBed narrowPeak
50
tagAlign
9
bed bed3+
bed broadPeak
9
bigBed broadPeak
1
csv
Organism
392
Homo sapiens
Biosample type
204
tissue
148
primary cell
40
cell line
Organ
224
liver
13
blood
13
bodily fluid
6
spleen
1
pancreas
Project
347
AMP
45
T1D
Genome assembly (visualization)
301
hg19
249
GRCh38
Lab
347
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
assay_slims!
DNA methylation
files.file_type!
bed broadPeak
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
392 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
54
spleen
6
pancreas
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
26
1
GM12878
13
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