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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
26
DNA binding
9
Transcription
6
3D chromatin structure
DNA methylation
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
10
June, 2019
9
August, 2017
8
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
67
bigWig
60
bed narrowPeak
56
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
44
Homo sapiens
Biosample type
32
tissue
12
primary cell
Organ
872
pancreas
721
liver
667
connective tissue
482
adipose tissue
449
epithelium
353
heart
272
kidney
237
brain
216
vasculature
215
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
eye
44
musculature of body
41
nerve
37
embryo
22
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
24
hg19
19
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
files.file_type!
bed broadPeak
organ_slims!
eye
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
1
1
1
1
muscle of leg
7
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
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