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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
31
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
31
DNA binding
Target of assay
31
control
Date released
686
February, 2021
314
May, 2020
265
May, 2021
254
August, 2017
213
August, 2021
168
July, 2018
140
February, 2023
125
October, 2019
121
May, 2022
93
November, 2017
74
July, 2019
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
16
January, 2021
15
April, 2019
15
May, 2023
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
8
November, 2018
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
501
bam
470
bigWig
bed narrowPeak
210
bigBed narrowPeak
189
tsv
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
50
tagAlign
Organism
322
Homo sapiens
Biosample type
166
tissue
155
primary cell
1
cell line
Organ
167
liver
3
connective tissue
2
epithelium
2
heart
2
musculature of body
1
eye
1
kidney
Project
277
AMP
45
T1D
Genome assembly (visualization)
233
hg19
188
GRCh38
Lab
277
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bed narrowPeak
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
322 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
23
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 31 more…
cell line
HepG2
1
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