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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
145
ChIP-seq
8
snATAC-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
145
DNA binding
10
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
114
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
32
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
8
January, 2019
8
January, 2021
8
July, 2019
5
December, 2019
4
November, 2018
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
January, 2018
1
October, 2019
Available data
740
bam
676
bigWig
522
fastq
bed narrowPeak
412
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
358
Homo sapiens
Biosample type
243
tissue
99
cell line
15
primary cell
1
in vitro differentiated cells
Organ
pancreas
602
connective tissue
472
adipose tissue
343
liver
320
epithelium
192
heart
167
kidney
151
bone element
100
vasculature
99
blood vessel
81
brain
67
artery
30
musculature of body
29
limb
27
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
9
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
350
AMP
8
T1D
Genome assembly (visualization)
187
hg19
163
GRCh38
Lab
313
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_slims!
DNA methylation
files.file_type!
bed narrowPeak
organ_slims!
pancreas
BIOSAMPLE
ASSAY
358 results
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total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
ATAC-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
1
1
1
1
right lobe of liver
3
3
2
1
cell line
HepG2
14
71
2
2
2
1
GM12878
6
1
primary cell
peripheral blood mononuclear cell
8
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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