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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
139
ChIP-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
139
DNA binding
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
32
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
8
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
680
bam
621
bigWig
462
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
343
Homo sapiens
Biosample type
243
tissue
92
cell line
7
primary cell
1
in vitro differentiated cells
Organ
679
pancreas
602
connective tissue
472
adipose tissue
343
liver
320
epithelium
192
heart
167
kidney
151
bone element
100
vasculature
99
blood vessel
81
brain
67
artery
30
musculature of body
29
limb
27
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
9
spleen
9
vein
8
skeleton
5
gonad
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
343
AMP
Genome assembly (visualization)
186
hg19
163
GRCh38
Lab
306
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
assay_slims!
DNA methylation
files.file_type!
bed narrowPeak
organ_slims!
ovary
BIOSAMPLE
ASSAY
343 results
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total RNA-seq
ChIP-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
1
1
1
1
right lobe of liver
3
3
2
1
cell line
HepG2
14
71
2
2
2
1
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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