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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
49
total RNA-seq
20
single cell RNA-seq
16
snATAC-seq
10
MeRIP-seq
1
Hi-C
Assay category
91
DNA accessibility
69
Transcription
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
128
August, 2021
19
April, 2020
14
May, 2023
10
November, 2020
Available data
64
bed narrowPeak
64
xls
57
txt
1
hic
Organism
170
Homo sapiens
Biosample type
165
tissue
6
cell line
Organ
142
kidney
19
lung
10
pancreas
6
epithelium
Project
152
AMP
19
LungMap
Genome assembly (visualization)
75
GRCh38
1
hg19
Lab
3862
AMP-T2D consortium
343
Kyle Gaulton, UCSD
277
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bedpe
BIOSAMPLE
ASSAY
171 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
tissue
kidney
75
49
11
6
1
lung
9
10
islet of Langerhans
4
cell line
EndoC_BH1
6
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