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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
34
single cell RNA-seq
26
total RNA-seq
23
ChIP-seq
22
snATAC-seq
Assay category
79
DNA accessibility
60
Transcription
DNA methylation
23
DNA binding
Target of assay
23
control
Date released
272
August, 2021
202
February, 2023
158
February, 2021
139
May, 2022
126
August, 2017
107
October, 2019
95
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
July, 2019
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
144
bam
135
bed narrowPeak
bigWig
97
bigBed narrowPeak
93
zippedFastqFolder
24
fastq
7
txt
1
bed bed3+
Organism
162
Homo sapiens
Biosample type
94
primary cell
68
tissue
Organ
64
pancreas
40
epithelium
20
liver
11
blood vessel
11
vasculature
6
heart
3
brain
3
musculature of body
2
artery
1
kidney
1
limb
Project
93
HPAP
69
AMP
Genome assembly (visualization)
19
hg19
Lab
93
Klaus Kaestner, Upenn
25
AMP-T2D consortium
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
bigWig
BIOSAMPLE
ASSAY
162 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
kidney epithelial cell
1
tissue
islet of Langerhans
18
6
liver
20
thoracic aorta
4
ascending aorta
3
right atrium auricular region
3
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