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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
7
ChIP-seq
Assay category
79
DNA accessibility
61
Transcription
DNA methylation
7
DNA binding
Target of assay
6
control
1
recombinant protein
1
transcription factor
Date released
272
August, 2021
202
February, 2023
158
February, 2021
139
May, 2022
126
August, 2017
107
October, 2019
95
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
July, 2019
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
111
bed narrowPeak
105
fastq
104
bam
bigWig
93
zippedFastqFolder
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
txt
1
csv
Organism
147
Homo sapiens
Biosample type
94
primary cell
49
tissue
4
cell line
Organ
63
pancreas
39
epithelium
21
liver
3
blood
3
bodily fluid
3
spleen
2
musculature of body
Project
93
HPAP
54
AMP
Genome assembly (visualization)
19
hg19
Lab
93
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
1
missing controlled_by
assay_slims!
DNA methylation
files.file_type!
bigWig
month_released!
May, 2019
BIOSAMPLE
ASSAY
147 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
pancreatic cell
1
tissue
islet of Langerhans
18
6
liver
20
spleen
3
skeletal muscle tissue
1
1
cell line
GM12878
3
HepG2
1
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