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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
524
ChIP-seq
188
total RNA-seq
22
ATAC-seq
6
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
whole genome sequencing assay
Assay category
524
DNA binding
191
Transcription
28
DNA accessibility
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
98
histone modification
97
histone
82
recombinant protein
58
RNA binding protein
58
narrow histone mark
39
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
194
May, 2020
60
December, 2017
50
August, 2017
47
November, 2018
40
May, 2022
35
August, 2021
8
July, 2019
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
650
bam
592
bigWig
439
fastq
412
bed narrowPeak
335
bigBed narrowPeak
173
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
csv
1
hdf5
1
vcf
Organism
753
Homo sapiens
Biosample type
380
cell line
347
tissue
14
in vitro differentiated cells
12
primary cell
Organ
875
pancreas
753
liver
671
connective tissue
484
adipose tissue
435
epithelium
375
heart
315
kidney
198
brain
186
vasculature
181
blood vessel
159
bone element
115
artery
90
musculature of body
59
blood
59
bodily fluid
52
limb
39
eye
37
embryo
23
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
753
AMP
Genome assembly (visualization)
593
hg19
502
GRCh38
Lab
682
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
16
inconsistent control read length
assay_slims!
DNA methylation
files.file_type!
csv
month_released!
October, 2019
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
753 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
whole genome sequencing assay
cell line
HepG2
358
14
1
2
2
2
1
tissue
liver
138
166
20
2
1
1
1
right lobe of liver
10
3
1
2
2
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
4
5
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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