Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
Assay category
38
DNA accessibility
17
DNA binding
7
Transcription
4
3D chromatin structure
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
26
October, 2019
4
July, 2019
3
February, 2020
1
May, 2019
Available data
59
bam
42
bigWig
38
bed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
Organism
66
Homo sapiens
Biosample type
66
tissue
Organ
742
pancreas
680
liver
599
connective tissue
453
adipose tissue
378
epithelium
315
kidney
286
heart
162
vasculature
bone element
158
blood vessel
121
artery
97
brain
72
limb
68
blood
68
bodily fluid
57
eye
57
musculature of body
25
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
42
GRCh38
42
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA methylation
files.file_type!
csv
organ_slims!
bone element
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
66 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
tissue
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
+ See 2 more…
See all biosamples
Download