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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA binding
DNA methylation
Target of assay
33
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
8
July, 2019
5
March, 2020
3
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
42
bam
40
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
2
bedpe bed3+
2
hic
2
tagAlign
1
txt
Organism
57
Homo sapiens
Biosample type
52
tissue
5
primary cell
Organ
742
pancreas
680
liver
599
connective tissue
453
adipose tissue
378
epithelium
315
kidney
286
heart
162
vasculature
159
bone element
158
blood vessel
121
artery
97
brain
72
limb
68
blood
68
bodily fluid
57
eye
57
musculature of body
25
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
43
hg19
39
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
assay_slims!
DNA methylation
files.file_type!
csv
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
57 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
3
1
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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