Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
26
ChIP-seq
22
ATAC-seq
3
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
26
DNA binding
25
DNA accessibility
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
histone
11
histone modification
11
transcription factor
6
narrow histone mark
5
broad histone mark
4
control
1
RNA binding protein
Date released
144
May, 2020
40
May, 2022
31
August, 2021
8
July, 2019
7
October, 2019
5
December, 2019
4
August, 2017
3
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
Available data
680
bam
621
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
248
Homo sapiens
Biosample type
205
tissue
34
cell line
9
primary cell
Organ
543
connective tissue
435
adipose tissue
401
pancreas
350
kidney
341
heart
248
liver
198
epithelium
186
vasculature
184
blood vessel
152
brain
151
bone element
121
limb
100
artery
75
musculature of body
43
nerve
29
eye
22
vein
20
lung
18
ureter
10
embryo
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
248
AMP
Genome assembly (visualization)
204
hg19
166
GRCh38
Lab
177
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA methylation
files.file_type!
fastq
tagAlign
month_released!
February, 2023
BIOSAMPLE
ASSAY
248 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
8
20
1
1
1
1
right lobe of liver
3
1
2
cell line
HepG2
9
18
1
1
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download